Initialize

Prepare directories¶

Create a working directory and subdirectories:

mkdir MOP2
cd MOP2
mkdir MOP2_work
mkdir MOP2_output

Scripts and dependencies¶

Copy the following files and folders in your working directory:

cp /scratch/cluster_scratch/guibletwm/MOP2_repo/ ./

Download the following files in the working directory:

• PolyATail.sh

Paths¶

Modify the following paths in PolyATail.sh:

• basedir
• nextflow
• procdir