Run

Run pipeline:¶

On biowulf,

Load the latest version of the pipeline:

export PATH=$PATH:/data/RBL_NCI/iCLIP/latest/

Run the pipeline with genomic coordinates:

sbatch iCLIP_latest.sh "your_directory"

After running with genomic coordinates, you can also run for transcriptomic coordinates:

sbatch iCLIP_Transcriptome_latest.sh "your_directory"

You can add the option -resume to resume a failed/interrupted run.